244 citations · 312 across the 4 of their papers we have counts for
4 papers
PhaBOX: A web server for identifying and characterizing phage contigs in metagenomic data
Jiayu Shang, Cheng Peng, Herui Liao +2
Motivation: There is accumulating evidence showing the important roles of bacteriophages (phages) in regulating the structure and functions of the microbiome. However, lacking an e…
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer
Jiayu Shang, Cheng Peng, Xubo Tang +1
Motivation: As viruses that mainly infect bacteria, phages are key players across a wide range of ecosystems. Analyzing phage proteins is indispensable for understanding phages' fu…
PhaTYP: Predicting the lifestyle for bacteriophages using BERT
Jiayu Shang, Xubo Tang, Yanni Sun
Bacteriophages (or phages), which infect bacteria, have two distinct lifestyles: virulent and temperate. Predicting the lifestyle of phages helps decipher their interactions with t…
Accurate identification of bacteriophages from metagenomic data using Transformer
Jiayu Shang, Xubo Tang, Ruocheng Guo +1
Motivation: Bacteriophages are viruses infecting bacteria. Being key players in microbial communities, they can regulate the composition/function of microbiome by infecting their b…