4 citations · 5 across the 4 of their papers we have counts for
5 papers
On de novo Bridging Paired-end RNA-seq Data
Xiang Li, Mingfu Shao
The high-throughput short-reads RNA-seq protocols often produce paired-end reads, with the middle portion of the fragments being unsequenced. We explore if the full-length fragment…
On the Maximal Independent Sets of -mers with the Edit Distance
Leran Ma, Ke Chen, Mingfu Shao
In computational biology, -mers and edit distance are fundamental concepts. However, little is known about the metric space of all -mers equipped with the edit distance. In t…
Locality-sensitive bucketing functions for the edit distance
Ke Chen, Mingfu Shao
Many bioinformatics applications involve bucketing a set of sequences where each sequence is allowed to be assigned into multiple buckets. To achieve both high sensitivity and prec…
Improving protein threading accuracy via combining local and global potential using TreeCRF model
Haicang Zhang, Mingfu Shao, Chao Wang +3
Protein structure prediction remains to be an open problem in bioinformatics. There are two main categories of methods for protein structure prediction: Free Modeling (FM) and Temp…
Looking for packing units of the protein structure
Wei-Mou Zheng, Hui Zeng, Dong-Bo Bu +3
Lattice-model simulations and experiments of some small proteins suggest that folding is essentially controlled by a few conserved contacts. Residues of these conserved contacts fo…