14 citations · 36 across the 7 of their papers we have counts for
7 papers
DockGame: Cooperative Games for Multimeric Rigid Protein Docking
Vignesh Ram Somnath, Pier Giuseppe Sessa, Maria Rodriguez Martinez +1
Protein interactions and assembly formation are fundamental to most biological processes. Predicting the assembly structure from constituent proteins -- referred to as the protein…
Conformal Autoregressive Generation: Beam Search with Coverage Guarantees
Nicolas Deutschmann, Marvin Alberts, María Rodríguez Martínez
We introduce two new extensions to the beam search algorithm based on conformal predictions (CP) to produce sets of sequences with theoretical coverage guarantees. The first method…
Adaptive Conformal Regression with Jackknife+ Rescaled Scores
Nicolas Deutschmann, Mattia Rigotti, Maria Rodriguez Martinez
Conformal regression provides prediction intervals with global coverage guarantees, but often fails to capture local error distributions, leading to non-homogeneous coverage. We ad…
Attention-based Interpretable Regression of Gene Expression in Histology
Mara Graziani, Niccolò Marini, Nicolas Deutschmann +3
Interpretability of deep learning is widely used to evaluate the reliability of medical imaging models and reduce the risks of inaccurate patient recommendations. For models exceed…
Is Attention Interpretation? A Quantitative Assessment On Sets
Jonathan Haab, Nicolas Deutschmann, Maria Rodríguez Martínez
The debate around the interpretability of attention mechanisms is centered on whether attention scores can be used as a proxy for the relative amounts of signal carried by sub-comp…
Observational Consequences of a Landscape: Epilogue
Ben Freivogel, Matthew Kleban, Maria Rodriguez Martinez +1
In this follow-up to our paper from 2005, we briefly discuss the implications of the apparent detection of B modes in the Cosmic Microwave Background for the issues raised in that…