3 papers
cs.LG2026
Structure-guided molecular design with contrastive 3D protein-ligand learning
Carles Navarro, Philipp Tholke, Gianni de Fabritiis
Structure-based drug discovery faces the dual challenge of accurately capturing 3D protein-ligand interactions while navigating ultra-large chemical spaces to identify syntheticall…
q-bio.BM2025
Speak to a Protein: An Interactive Multimodal Co-Scientist for Protein Analysis
Carles Navarro, Mariona Torrens, Philipp Thölke +2
Building a working mental model of a protein typically requires weeks of reading, cross-referencing crystal and predicted structures, and inspecting ligand complexes, an effort tha…
q-bio.BM2024
On Machine Learning Approaches for Protein-Ligand Binding Affinity Prediction
Nikolai Schapin, Carles Navarro, Albert Bou +1
Binding affinity optimization is crucial in early-stage drug discovery. While numerous machine learning methods exist for predicting ligand potency, their comparative efficacy rema…