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cs.AR2026
GenPairX: A Hardware-Algorithm Co-Designed Accelerator for Paired-End Read Mapping
Julien Eudine, Chu Li, Zhuo Cheng +11
Genome sequencing has become a central focus in computational biology. A genome study typically begins with sequencing, which produces millions to billions of short DNA fragments k…
cs.AR2024
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
Nika Mansouri Ghiasi, Mohammad Sadrosadati, Harun Mustafa +9
Metagenomics has led to significant advances in many fields. Metagenomic analysis commonly involves the key tasks of determining the species present in a sample and their relative…