Danielle O’Donnol

collaborators

3 papers

math.GT2014

Intrinsic 3-linkedness is Not Preserved by $Y \nabla$ moves

Danielle O'Donnol

This paper introduces a number of new intrinsically 3-linked graphs through five new constructions. We then prove that intrinsic 3-linkedness is not preserved by $Y \nabla$ m…

cs.CE2014

An application of topological graph clustering to protein function prediction

R. Sean Bowman, Douglas Heisterkamp, Jesse Johnson +1

We use a semisupervised learning algorithm based on a topological data analysis approach to assign functional categories to yeast proteins using similarity graphs. This new approac…

math.GT2010

Knotting and linking in the Petersen family

Danielle O'Donnol

This paper focuses on the graphs in the Petersen family, the set of minor minimal intrinsically linked graphs. We prove there is a relationship between algebraic linking of an embe…

Intrinsic 3-linkedness is Not Preserved by Y∇ moves

An application of topological graph clustering to protein function prediction

Knotting and linking in the Petersen family

Intrinsic 3-linkedness is Not Preserved by $Y \nabla$ moves