3 papers
q-bio.QM2026
AROMA: Augmented Reasoning Over a Multimodal Architecture for Virtual Cell Genetic Perturbation Modeling
Zhenyu Wang, Geyan Ye, Wei Liu +1
Virtual cell modeling predicts molecular state changes under genetic perturbations in silico, which is essential for biological mechanism studies. However, existing approaches suff…
q-bio.QM2025
Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation
Yikun Zhang, Geyan Ye, Chaohao Yuan +5
Molecule-and-text cross-modal representation learning has emerged as a promising direction for enhancing the quality of molecular representation, thereby improving performance in v…
q-bio.QM2024
Annotation-guided Protein Design with Multi-Level Domain Alignment
Chaohao Yuan, Songyou Li, Geyan Ye +6
The core challenge of de novo protein design lies in creating proteins with specific functions or properties, guided by certain conditions. Current models explore to generate prote…