most citedFrom Words to Amino Acids: Does the Curse of Depth Persist?

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5 papers

cs.LG20261 cited

From Words to Amino Acids: Does the Curse of Depth Persist?

Aleena Siji, Amir Mohammad Karimi Mamaghan, Ferdinand Kapl +9

Protein language models (PLMs) have become widely adopted as general-purpose models, demonstrating strong performance in protein engineering and de novo design. Like large language…

cs.CL2026

From Growing to Looping: A Unified View of Iterative Computation in LLMs

Ferdinand Kapl, Emmanouil Angelis, Kaitlin Maile +2

Looping, reusing a block of layers across depth, and depth growing, training shallow-to-deep models by duplicating middle layers, have both been linked to stronger reasoning, but t…

cs.CL2025

Do Depth-Grown Models Overcome the Curse of Depth? An In-Depth Analysis

Ferdinand Kapl, Emmanouil Angelis, Tobias Höppe +4

Gradually growing the depth of Transformers during training can not only reduce training cost but also lead to improved reasoning performance, as shown by MIDAS (Saunshi et al., 20…

cs.LG2025

Double Machine Learning Based Structure Identification from Temporal Data

Emmanouil Angelis, Francesco Quinzan, Ashkan Soleymani +2

Learning the causes of time-series data is a fundamental task in many applications, spanning from finance to earth sciences or bio-medical applications. Common approaches for this…

stat.ML2025

Minimum-Excess-Work Guidance

Christopher Kolloff, Tobias Höppe, Emmanouil Angelis +4

We propose a regularization framework inspired by thermodynamic work for guiding pre-trained probability flow generative models (e.g., continuous normalizing flows or diffusion mod…