149 citations · 233 across the 4 of their papers we have counts for
4 papers
Unification of species, gene, and cell trees for single-cell expression analyses
Samuel H. Church, Jasmine L. Mah, Casey W. Dunn
Comparisons of single-cell RNA sequencing (scRNA-seq) data across species can reveal links between cellular gene expression and the evolution of cell functions, features, and pheno…
Bayesian genome assembly and assessment by Markov Chain Monte Carlo sampling
Mark Howison, Felipe Zapata, Erika J. Edwards +1
Most genome assemblers construct point estimates, choosing a genome sequence from among many alternative hypotheses that are supported by the data. We present a Markov Chain Monte…
Agalma: an automated phylogenomics workflow
Casey W. Dunn, Mark Howison, Felipe Zapata
In the past decade, transcriptome data have become an important component of many phylogenetic studies. Phylogenetic studies now regularly include genes from newly sequenced transc…
Phylogenetic analysis of gene expression
Casey W. Dunn, Xi Luo, Zhijin Wu
Phylogenetic analyses of gene expression have great potential for addressing a wide range of questions. These analyses will, for example, identify genes that have evolutionary shif…