14 citations · 14 across the 3 of their papers we have counts for
3 papers
q-bio.QM2016
EMDUnifrac: Exact Linear Time Computation of the Unifrac Metric and Identification of Differentially Abundant Organisms
Jason McClelland, David Koslicki
Both the weighted and unweighted Unifrac distances have been very successfully employed to assess if two communities differ, but do not give any information about how two communiti…
q-bio.PE2016
Exact probabilities for the indeterminacy of complex networks as perceived through press perturbations
David Koslicki, Mark Novak
We consider the goal of predicting how complex networks respond to chronic (press) perturbations when characterizations of their network topology and interaction strengths are asso…
q-bio.GN2014★ 14 cited
SEK: Sparsity exploiting -mer-based estimation of bacterial community composition
Saikat Chatterjee, David Koslicki, Siyuan Dong +8
Motivation: Estimation of bacterial community composition from a high-throughput sequenced sample is an important task in metagenomics applications. Since the sample sequence data…