4 papers
denet, A lightweight command-line tool for process monitoring in benchmarking and beyond
Ben Carrillo, Izaskun Mallona
Summary: denet is a lightweight process monitoring tool providing real-time resource profiling of running processes. It reports CPU, memory, disk I/O, network activity, and thread…
Omnibenchmark: transparent, reproducible, extensible and standardized orchestration of solo and collaborative benchmarks
Izaskun Mallona, Almut Luetge, Ben Carrillo +6
Benchmarking involves designing, running and disseminating rigorous performance assessments of methods, most often for data analysis and software tools, but the process can also be…
Building a continuous benchmarking ecosystem in bioinformatics
Izaskun Mallona, Charlotte Soneson, Ben Carrillo +5
Benchmarking, which involves collecting reference datasets and demonstrating method performances, is a requirement for the development of new computational tools, but also becomes…
Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
Martin Emons, Samuel Gunz, Helena L. Crowell +3
Spatial omics assays allow for the molecular characterisation of cells in their spatial context. Notably, the two main technological streams, imaging-based and high-throughput sequ…