105 citations · 174 across the 5 of their papers we have counts for
5 papers
HiTRACE: High-throughput robust analysis for capillary electrophoresis
Sungroh Yoon, Jinkyu Kim, Justine Hum +4
Motivation: Capillary electrophoresis (CE) of nucleic acids is a workhorse technology underlying high-throughput genome analysis and large-scale chemical mapping for nucleic acid s…
Can biopolymer structures be sampled enumeratively? Atomic-accuracy RNA loop modeling by a stepwise ansatz
Parin Sripakdeevong, Wipapat Kladwang, Rhiju Das
Atomic-accuracy structure prediction of macromolecules is a long-sought goal of computational biophysics. Accurate modeling should be achievable by optimizing a physically realisti…
Two-dimensional chemical mapping for non-coding RNAs
Wipapat Kladwang, Christopher C. VanLang, Pablo Cordero +1
Non-coding RNA molecules fold into precise base pairing patterns to carry out critical roles in genetic regulation and protein synthesis. We show here that coupling systematic muta…
Why Can't We Predict RNA Structure At Atomic Resolution?
Kyle Beauchamp, Parin Sripakdeevong, Rhiju Das
No existing algorithm can start with arbitrary RNA sequences and return the precise, three-dimensional structures that ensures their biological function. This chapter outlines curr…
Four small puzzles that Rosetta doesn't solve
Rhiju Das
A complete macromolecule modeling package must be able to solve the simplest structure prediction problems. Despite recent successes in high resolution structure modeling and desig…