18 citations · 19 across the 3 of their papers we have counts for
3 papers
cs.DC2025★ 18 cited
A Terminology for Scientific Workflow Systems
Frédéric Suter, Tainã Coleman, İlkay Altintaş +23
The term scientific workflow has evolved over the last two decades to encompass a broad range of compositions of interdependent compute tasks and data movements. It has also become…
cs.SE2025★ 1 cited
Snakemaker: Seamlessly transforming ad-hoc analyses into sustainable Snakemake workflows with generative AI
Marco Masera, Alessandro Leone, Johannes Köster +1
Reproducibility and sustainability present significant challenges in bioinformatics software development, where rapidly evolving tools and complex workflows often result in short-l…
cs.DS2014
Massively parallel read mapping on GPUs with PEANUT
Johannes Köster, Sven Rahmann
We present PEANUT (ParallEl AligNment UTility), a highly parallel GPU-based read mapper with several distinguishing features, including a novel q-gram index (called the q-group ind…