5 citations · 5 across the 3 of their papers we have counts for
3 papers
KMC 3: counting and manipulating k-mer statistics
Marek Kokot, Maciej Długosz, Sebastian Deorowicz
Summary: Counting all k-mers in a given dataset is a standard procedure in many bioinformatics applications. We introduce KMC3, a significant improvement of the former KMC2 algorit…
Sorting Data on Ultra-Large Scale with RADULS. New Incarnation of Radix Sort
Marek Kokot, Sebastian Deorowicz, Agnieszka Debudaj-Grabysz
The paper introduces RADULS, a new parallel sorter based on radix sort algorithm, intended to organize ultra-large data sets efficiently. For example 4G 16-byte records can be sort…
Disk-based genome sequencing data compression
Szymon Grabowski, Sebastian Deorowicz, Łukasz Roguski
Motivation: High-coverage sequencing data have significant, yet hard to exploit, redundancy. Most FASTQ compressors cannot efficiently compress the DNA stream of large datasets, si…