most citedTo Transformers and Beyond: Large Language Models for the Genome

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cs.LG2026

IsoAlign: Isoform-Aware DNA-Protein Alignment via Joint-Embedding Predictive Architectures

Niousha Sadjadi, Arman Seyed-Ahmadi, Tony Tu +8

Genomic foundation models (GFMs) have emerged as a powerful paradigm for learning DNA sequence representations, yet existing self-supervised pretraining strategies overlook alterna…