3 papers
cs.DS2026
Average-Tree Phylogenetic Diversity Parameterized by Scanwidth and Invisibility
Leo van Iersel, Mark Jones, Jannik Schestag +2
We investigate parameterized algorithms for computing the average-tree phylogenetic diversity (APD) in rooted phylogenetic networks, studying the problem under different structural…
q-bio.PE2026
LvD: A New Algorithm for Computing the Likelihood of a Phylogeny
David Bryant, Celine Scornavacca, David Swofford
There are few, if any, algorithms in statistical phylogenetics which are used more heavily than Felsenstein's 1973 pruning method for computing the likelihood of a tree. We present…
cs.CC2025
Phylogenetic Network Diversity Parameterized by Reticulation Number and Beyond
Leo van Iersel, Mark Jones, Jannik Schestag +2
Network Phylogenetic Diversity (Network-PD) is a measure for the diversity of a set of species based on a rooted phylogenetic network (with branch lengths and inheritance probabili…