173 citations · 184 across the 2 of their papers we have counts for
2 papers
q-bio.GN2024★ 11 cited
DNABERT-S: Pioneering Species Differentiation with Species-Aware DNA Embeddings
Zhihan Zhou, Weimin Wu, Harrison Ho +5
We introduce DNABERT-S, a tailored genome model that develops species-aware embeddings to naturally cluster and segregate DNA sequences of different species in the embedding space.…
q-bio.GN2023★ 173 cited
DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Zhihan Zhou, Yanrong Ji, Weijian Li +3
Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made signific…