2 citations · 3 across the 3 of their papers we have counts for
3 papers
cs.DS2024★ 2 cited
Scalable and Interpretable Identification of Minimal Undesignable RNA Structure Motifs with Rotational Invariance
Tianshuo Zhou, Wei Yu Tang, Apoorv Malik +2
RNA design aims to find a sequence that folds with highest probability into a designated target structure. However, certain structures are undesignable, meaning no sequence can fol…
q-bio.BM2023
LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs
Sizhen Li, Ning Dai, He Zhang +3
The classical Sankoff algorithm for the simultaneous folding and alignment of homologous RNA sequences is highly influential, but it suffers from two major limitations in efficienc…
q-bio.BM2022★ 1 cited
LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments
Apoorv Malik, Liang Zhang, Milan Gautam +5
Predicting the consensus structure of a set of aligned RNA homologs is a convenient method to find conserved structures in an RNA genome, which has many applications including vira…