92 citations · 101 across the 3 of their papers we have counts for
3 papers
cs.CL2024★ 5 cited
Thought Graph: Generating Thought Process for Biological Reasoning
Chi-Yang Hsu, Kyle Cox, Jiawei Xu +7
We present the Thought Graph as a novel framework to support complex reasoning and use gene set analysis as an example to uncover semantic relationships between biological processe…
q-bio.GN2023★ 92 cited
Evaluation of large language models for discovery of gene set function
Mengzhou Hu, Sahar Alkhairy, Ingoo Lee +6
Gene set analysis is a mainstay of functional genomics, but it relies on curated databases of gene functions that are incomplete. Here we evaluate five Large Language Models (LLMs)…
q-bio.QM2023★ 4 cited
Drugst.One -- A plug-and-play solution for online systems medicine and network-based drug repurposing
Andreas Maier, Michael Hartung, Mark Abovsky +36
In recent decades, the development of new drugs has become increasingly expensive and inefficient, and the molecular mechanisms of most pharmaceuticals remain poorly understood. In…