2 papers
cs.DS2026
Bayesian Credible Sets for Phylogenetic Tree Topologies with Applications to Coverage Analysis and Cross-Model Comparison
Jonathan Klawitter, Alexei J. Drummond
Credible intervals and credible sets, such as highest posterior density (HPD) intervals, form an integral statistical tool in Bayesian phylogenetics, both for phylogenetic analyses…
q-bio.PE2026
On estimating the effective sample size of phylogenetic trees in an autocorrelated chain
Jonathan Klawitter, Lars Berling, Jordan Douglas +2
Estimating the effective sample size (ESS) is fundamental in Bayesian phylogenetic inference to properly account for autocorrelation in MCMC samples. While methods for continuous p…