71 citations · 127 across the 5 of their papers we have counts for
5 papers
Biased Hypothesis Formation From Projection Pursuit
John Patterson, Chris Avery, Tyler Grear +1
The effect of bias on hypothesis formation is characterized for an automated data-driven projection pursuit neural network to extract and select features for binary classification…
Distribution of volume, microvoid percolation, and packing density in globular proteins
Jenny Farmer, Sheridan B. Green, Donald J. Jacobs
A fast and accurate grid-based method with low memory requirement is presented to calculate volume characteristics in molecular systems. The distribution of volume and packing dens…
Nonparametric Maximum Entropy Probability Density Estimation
Jenny Farmer, Donald J. Jacobs
Given a sample of independent and identically distributed random variables, a novel nonparametric maximum entropy method is presented to estimate the underlying continuous univaria…
Network rigidity at finite temperature: Relationships between thermodynamic stability, the non-additivity of entropy and cooperativity in molecular systems
Donald J. Jacobs, S. Dallakyan, G. G. Wood +1
A statistical mechanical distance constraint model (DCM) is presented that explicitly accounts for network rigidity among constraints present within a system. Constraints are chara…
Floppy modes and the free energy: Rigidity and connectivity percolation on Bethe Lattices
P. M. Duxbury, D. J. Jacobs, M. F. Thorpe +1
We show that negative of the number of floppy modes behaves as a free energy for both connectivity and rigidity percolation, and we illustrate this result using Bethe lattices. The…