53 citations · 189 across the 9 of their papers we have counts for
4 papers · 1 filter
Distinguishing Feedback Mechanisms in Clock Models
Alexander D. Golden, Joris Paijmans, David K. Lubensky
Biological oscillators are very diverse but can be classified based on dynamical motifs such as the types of feedback loops present. The S. Elongatus circadian clock is a remarkabl…
eGFRD in all dimensions
Thomas R. Sokolowski, Joris Paijmans, Laurens Bossen +7
Biochemical reactions typically occur at low copy numbers, but at once in crowded and diverse environments. Space and stochasticity therefore play an essential role in biochemical…
Discrete gene replication events drive coupling between the cell cycle and circadian clocks
Joris Paijmans, Mark Bosman, Pieter Rein ten Wolde +1
Many organisms possess both a cell cycle to control DNA replication and a circadian clock to anticipate changes between day and night. In some cases, these two rhythmic systems are…
The lower bound on the precision of transcriptional regulation
Joris Paijmans, Pieter Rein ten Wolde
The diffusive arrival of transcription factors at the promoter sites on the DNA sets a lower bound on how accurately a cell can regulate its protein levels. Using results from the…