6 papers
DOGMA: Weaving Structural Information into Data-centric Single-cell Transcriptomics Analysis
Ru Zhang, Xunkai Li, Yaxin Deng +7
Recently, data-centric AI methodology has been a dominant paradigm in single-cell transcriptomics analysis, which treats data representation rather than model complexity as the fun…
OpenDDI: A Comprehensive Benchmark for DDI Prediction
Xinmo Jin, Bowen Fan, Xunkai Li +9
Drug-Drug Interactions (DDIs) significantly influence therapeutic efficacy and patient safety. As experimental discovery is resource-intensive and time-consuming, efficient computa…
DANCE: Dynamic, Available, Neighbor-gated Condensation for Federated Text-Attributed Graphs
Zekai Chen, Haodong Lu, Xunkai Li +5
Federated graph learning (FGL) enables collaborative training on graph data across multiple clients. With the rise of large language models (LLMs), textual attributes in FGL graphs…
BoostFGL: Boosting Fairness in Federated Graph Learning
Zekai Chen, Kairui Yang, Xunkai Li +6
Federated graph learning (FGL) enables collaborative training of graph neural networks (GNNs) across decentralized subgraphs without exposing raw data. While existing FGL methods o…
AlgBench: To What Extent Do Large Reasoning Models Understand Algorithms?
Henan Sun, Kaichi Yu, Yuyao Wang +5
Reasoning ability has become a central focus in the advancement of Large Reasoning Models (LRMs). Although notable progress has been achieved on several reasoning benchmarks such a…
MagicDock: Toward Docking-oriented De Novo Ligand Design via Gradient Inversion
Zekai Chen, Xunkai Li, Sirui Zhang +6
De novo ligand design is a fundamental task that seeks to generate protein or molecule candidates that can effectively dock with protein receptors and achieve strong binding affini…