3 papers
eess.SY2025
On the Number of Control Nodes of Threshold and XOR Boolean Networks
Christopher H. Fok, Liangjie Sun, Tatsuya Akutsu +1
Boolean networks (BNs) are important models for gene regulatory networks and many other biological systems. In this paper, we study the minimal controllability problem of threshold…
eess.SY2025
On the Number of Control Nodes in Boolean Networks with Degree Constraints
Liangjie Sun, Wai-Ki Ching, Tatsuya Akutsu
This paper studies the minimum control node set problem for Boolean networks (BNs) with degree constraints. The main contribution is to derive the nontrivial lower and upper bounds…
q-bio.BM2005
A stochastic approach to multi-gene expression dynamics
T. Ochiai, J. C. Nacher, T. Akutsu
In the last years, tens of thousands gene expression profiles for cells of several organisms have been monitored. Gene expression is a complex transcriptional process where mRNA mo…