activity
20052025
most citedEffects of electrostatic interactions on ligand dissociation kinetics

23 citations · 50 across the 7 of their papers we have counts for

collaborators

8 papers

cond-mat.soft2025

Shape spectra of elastic shells with surface-adsorbed semiflexible polymers

Hadiya Abdul Hameed, Jaroslaw Paturej, Aykut Erbas

The shape of biological shells, such as cell nuclei, membranes, and vesicles, often deviates from a perfect sphere due to an interplay of complex interactions with a myriad of mole…

cond-mat.soft2024

Contraction response of a polyelectrolyte hydrogel under spatially nonuniform electric fields

Ekrem Bahceci, Aykut Erbas

One of the major challenges in contemporary materials science is to build synthetic structures that can mimic responsive biological tissues, such as artificial skins and muscles. P…

cond-mat.soft2023

Structural properties of cyclic polyelectrolytes in dilute good solvent

Andrzej Grzyb, Khristine Haydukivska, Jarosław S. Kłos +2

Cyclic polymers display unique physical behaviors in comparison to their linear counterparts. Theoretical, computational and experimental studies have revealed that some of their d…

physics.bio-ph2018

Receptor-ligand rebinding kinetics in confinement

Aykut Erbas, Monica Olvera de la Cruz, John F. Marko

Rebinding kinetics of molecular ligands plays a critical role in biomachinery, from regulatory networks to protein transcription, and is also a key factor for designing drugs and h…

physics.bio-ph2017★ 23 cited

Effects of electrostatic interactions on ligand dissociation kinetics

Aykut Erbas, Monica Olvera de la Cruz, John F. Marko

We study unbinding of multivalent cationic ligands from oppositely charged polymeric binding sites sparsely grafted on a flat neutral substrate. Our molecular dynamics (MD) simulat…

cond-mat.soft2015

Friction between Ring Polymer Brushes

A. Erbas, J. Paturej

Friction between ring-polymer brushes at melt densities sliding past each other are studied using extensive course-grained molecular dynamics simulations and scaling arguments, and…

cond-mat.soft2014★ 7 cited

Detachment of semiflexible polymer chains from a substrate - a Molecular Dynamics investigation

J. Paturej, A. Erbas, A. Milchev +1

Using Molecular Dynamics simulations, we study the force-induced detachment of a coarse-grained model polymer chain from an adhesive substrate. One of the chain ends is thereby pul…

cond-mat.stat-mech2005★ 20 cited

Phase Diagrams and Crossover in Spatially Anisotropic d=3 Ising, XY Magnetic and Percolation Systems: Exact Renormalization-Group Solutions of Hierarchical Models

A. Erbas, A. Tuncer, B. Yucesoy +1

Hierarchical lattices that constitute spatially anisotropic systems are introduced. These lattices provide exact solutions for hierarchical models and, simultaneously, approximate…