13 citations · 54 across the 17 of their papers we have counts for
4 papers · 1 filter
A Hierarchical Exact Accelerated Stochastic Simulation Algorithm
David Orendorff, Eric Mjolsness
A new algorithm, "HiER-leap", is derived which improves on the computational properties of the ER-leap algorithm for exact accelerated simulation of stochastic chemical kinetics. U…
Compositional Stochastic Modeling and Probabilistic Programming
Eric Mjolsness
Probabilistic programming is related to a compositional approach to stochastic modeling by switching from discrete to continuous time dynamics. In continuous time, an operator-alge…
Time-Ordered Product Expansions for Computational Stochastic Systems Biology
Eric Mjolsness
The time-ordered product framework of quantum field theory can also be used to understand salient phenomena in stochastic biochemical networks. It is used here to derive Gillespie'…
Tessellations and Pattern Formation in Plant Growth and Development
Bruce E Shapiro, Henrik Jonsson, Patrick Sahlin +5
The shoot apical meristem (SAM) is a dome-shaped collection of cells at the apex of growing plants from which all above-ground tissue ultimately derives. In Arabidopsis thaliana (t…