150 citations · 653 across the 18 of their papers we have counts for
18 papers
Engineering Supercomputing Platforms for Biomolecular Applications
Robert Welch, Charles Laughton, Oliver Henrich +5
A range of computational biology software (GROMACS, AMBER, NAMD, LAMMPS, OpenMM, Psi4 and RELION) was benchmarked on a representative selection of HPC hardware, including AMD EPYC…
Controllable particle migration in liquid crystal flows
Magdalena Lesniewska, Nigel Mottram, Oliver Henrich
We observe novel positional control of a colloidal particle in microchannel flow of a nematic liquid crystal. Lattice Boltzmann simulations show multiple equilibrium particle posit…
A primer on the oxDNA model of DNA: When to use it, how to simulate it and how to interpret the results
Aditya Sengar, Thomas E. Ouldridge, Oliver Henrich +2
The oxDNA model of DNA has been applied widely to systems in biology, biophysics and nanotechnology. It is currently available via two independent open source packages. Here we pre…
A Numerical Study of Three-Armed DNA Hydrogel Structures
Yair Augusto Gutierrez Fosado, Zhongyang Xing, Erika Eiser +2
We present a numerical analysis of a DNA hydrogel that consists of three-valent Y-shaped DNA molecules. The building blocks self-assemble fully reversibly from complementary single…
Shear-enhanced elasticity in the cubic blue phase I
Shuji Fujii, Oliver Henrich
We present results of the linear and non-linear rheology of cubic blue phase I (BPI). The elasticity of BPI is dominated by double-twist cylinders assembled in a body-centered cubi…
Coarse-Grained Simulation of DNA using LAMMPS
Oliver Henrich, Yair Augusto Gutierrez-Fosado, Tine Curk +1
During the last decade coarse-grained nucleotide models have emerged that allow us to DNA and RNA on unprecedented time and length scales. Among them is oxDNA, a coarse-grained, se…