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q-bio.PE2024
A consistent least-squares criterion for calibrating edge lengths in phylogenetic networks
Jingcheng Xu, Cécile Ané
In phylogenetic networks, it is desirable to estimate edge lengths in substitutions per site or calendar time. Yet, there is a lack of scalable methods that provide such estimates.…
q-bio.PE2024
Leveraging graphical model techniques to study evolution on phylogenetic networks
Benjamin Teo, Paul Bastide, Cécile Ané
The evolution of molecular and phenotypic traits is commonly modelled using Markov processes along a phylogeny. This phylogeny can be a tree, or a network if it includes reticulati…
q-bio.PE2024
Identifying circular orders for blobs in phylogenetic networks
John A. Rhodes, Hector Banos, Jingcheng Xu +1
Interest in the inference of evolutionary networks relating species or populations has grown with the increasing recognition of the importance of hybridization, gene flow and admix…