29 citations · 30 across the 2 of their papers we have counts for
4 papers
Joint Relational Database Generation via Graph-Conditional Diffusion Models
Mohamed Amine Ketata, David Lüdke, Leo Schwinn +1
Building generative models for relational databases (RDBs) is important for many applications, such as privacy-preserving data release and augmenting real datasets. However, most p…
Lift Your Molecules: Molecular Graph Generation in Latent Euclidean Space
Mohamed Amine Ketata, Nicholas Gao, Johanna Sommer +2
We introduce a new framework for molecular graph generation with 3D molecular generative models. Our Synthetic Coordinate Embedding (SyCo) framework maps molecular graphs to Euclid…
Uncertainty Estimation for Molecules: Desiderata and Methods
Tom Wollschläger, Nicholas Gao, Bertrand Charpentier +2
Graph Neural Networks (GNNs) are promising surrogates for quantum mechanical calculations as they establish unprecedented low errors on collections of molecular dynamics (MD) traje…
DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models
Mohamed Amine Ketata, Cedrik Laue, Ruslan Mammadov +6
Understanding how proteins structurally interact is crucial to modern biology, with applications in drug discovery and protein design. Recent machine learning methods have formulat…