38 citations · 47 across the 4 of their papers we have counts for
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q-bio.GN2025
LCPan: efficient variation graph construction using Locally Consistent Parsing
Akmuhammet Ashyralyyev, Zülal Bingöl, Begüm Filiz Öz +5
Efficient and consistent string processing is critical in the exponentially growing genomic data era. Locally Consistent Parsing (LCP) addresses this need by partitioning an input…
q-bio.GN2021★ 8 cited
GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
Zülal Bingöl, Mohammed Alser, Onur Mutlu +2
At the last step of short read mapping, the candidate locations of the reads on the reference genome are verified to compute their differences from the corresponding reference segm…