57 citations · 57 across the 1 of their papers we have counts for
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Bubble Statistics and Dynamics in Double-Stranded DNA
B. S. Alexandrov, L. T. Wille, K. O. Rasmussen +2
The dynamical properties of double-stranded DNA are studied in the framework of the Peyrard-Bishop-Dauxois model using Langevin dynamics. Our simulations are analyzed in terms of t…
Healing Length and Bubble Formation in DNA
Z. Rapti, A. Smerzi, K. O. Rasmussen +3
We have recently suggested that the probability for the formation of thermally activated DNA bubbles is, to a very good approximation, proportional to the number of soft AT pairs o…
Probing the mechanical unzipping of DNA
N. K. Voulgarakis, A. Redondo, A. R. Bishop +1
A study of the micromechanical unzipping of DNA in the framework of the Peyrard-Bishop-Dauxois model is presented. We introduce a Monte Carlo technique that allows accurate determi…
Lengthscales and Cooperativity in DNA Bubble Formation
Z. Rapti, A. Smerzi, K. Ø. Rasmussen +1
It appears that thermally activated DNA bubbles of different sizes play central roles in important genetic processes. Here we show that the probability for the formation of such bu…