activity
20062020
most citedA general theory of kinetics and thermodynamics of steady-state copolymerization

16 citations · 40 across the 6 of their papers we have counts for

collaborators

6 papers

physics.bio-ph2020

A critical survey on the kinetic assays of DNA polymerase fidelity from a new theoretical perspective

Qiu-Shi Li, Yao-Gen Shu, Zhong-Can Ou-Yang +1

The high fidelity of DNA polymerase is critical for the faithful replication of genomic DNA. Several approaches were proposed to quantify the fidelity of DNA polymerase. Direct mea…

cond-mat.soft2019

Magnetic deformation theory of a vesicle

Yao-Gen Shu, Zhong-Can Ou-Yang

We have extended the Helfrich's spontaneous curvature model [M. Iwamoto and Z. C. Ou-Yang. Chem. Phys. Lett. \textbf{590}(2013)183; Y. X. Deng, et.al., EPL. \textbf{123}(2018)68002…

cond-mat.stat-mech2019★ 11 cited

The template-specific fidelity of DNA replication with high-order neighbor effects: a first-passage approach

Qiu-Shi Li, Pei-Dong Zheng, Yao-Gen Shu +2

DNA replication fidelity is a critical issue in molecular biology. Biochemical experiments have provided key insights on the mechanism of fidelity control by DNAP in the past decad…

q-bio.SC2016★ 13 cited

Proofreading of DNA Polymerase: a new kinetic model with higher-order terminal effects

Yong-Shun Song, Yao-Gen Shu, Xin Zhou +2

The fidelity of DNA replication by DNA polymerase (DNAP) has long been an important issue in biology. While numerous experiments have revealed details of the molecular structure an…

cond-mat.stat-mech2015★ 16 cited

A general theory of kinetics and thermodynamics of steady-state copolymerization

Yao-Gen Shu, Yong-Shun Song, Zhong-Cun Ou-Yang +1

Kinetics of steady-state copolymerization has been investigated since 1940s. Irreversible terminal and penultimate models were successfully applied to a number of comonomer systems…

q-bio.OT2006

Mechanochemical coupling of kinesin studied with the neck linker swing model

Yaogen Shu, Hualin Shi

We have proposed the neck linker swing model to investigate the mechanism of mechanochemical coupling of kinesin. The Michaelis-Menten-like curve for velocity vs ATP concentration…