2 citations · 2 across the 4 of their papers we have counts for
5 papers
Hakken: Predicting future discoveries to fill the gaps in today's knowledge
Tarek R. Besold, Uchenna Akujuobi, Pablo Sanchez +21
We present Hakken, a domain-agnostic prediction and explanation system performing knowledge prediction, i.e., growing scientific knowledge by establishing novel relationships, ones…
ProtoCode: Leveraging Large Language Models for Automated Generation of Machine-Readable Protocols from Scientific Publications
Shuo Jiang, Daniel Evans-Yamamoto, Dennis Bersenev +2
Protocol standardization and sharing are crucial for reproducibility in life sciences. In spite of numerous efforts for standardized protocol description, adherence to these standa…
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
This paper evaluates the difference between human pathway curation and current NLP systems. We propose graph analysis methods for quantifying the gap between human curated pathway…
Extracting Biological Pathway Models From NLP Event Representations
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
This paper describes an an open-source software system for the automatic conversion of NLP event representations to system biology structured data interchange formats such as SBML…
Probabilistic verification of partially observable dynamical systems
Benjamin M. Gyori, Daniel Paulin, Sucheendra K. Palaniappan
The construction and formal verification of dynamical models is important in engineering, biology and other disciplines. We focus on non-linear models containing a set of parameter…