3 papers
q-bio.MN2026
RAG-GNN: Integrating Retrieved Knowledge with Graph Neural Networks for Precision Medicine
Hasi Hays, William J. Richardson
Network topology excels at structural predictions but fails to capture functional semantics encoded in biomedical literature. We present RAG-GNN, an end-to-end trainable retrieval-…
q-bio.MN2026
ECMSim: A high-performance interactive web application for real-time spatiotemporal simulation of cardiac ECM signaling and diffusion
Hasi Hays, William J. Richardson
Extracellular matrix (ECM) remodeling is central to a wide variety of healthy and diseased tissue processes. Unfortunately, predicting ECM remodeling under various chemical and mec…
q-bio.MN2025
Hierarchical Molecular Language Models (HMLMs)
Hasi Hays, Yue Yu, William J. Richardson
Artificial intelligence (AI) is reshaping computational and network biology by enabling new approaches to decode cellular communication networks. We introduce Hierarchical Molecula…