activity
20062025
most citedLarge-scale inference and graph theoretical analysis of gene-regulatory networks in B. stubtilis

20 citations · 20 across the 5 of their papers we have counts for

collaborators

5 papers

cond-mat.stat-mech2025

From point patterns to networks: to what extent does the Delaunay triangulation reproduce key spatial and density information?

Eli Newby, Wenlong Shi, Yang Jiao +2

It is important that a spatial network's construction algorithm reproduces the structural properties of the original physical embedding. Here, we assess the Delaunay triangulation…

cs.DM2025

On the number of asynchronous attractors in AND-NOT Boolean networks

Van-Giang Trinh, Samuel Pastva, Jordan Rozum +2

Boolean Networks (BNs) describe the time evolution of binary states using logic functions on the nodes of a network. They are fundamental models for complex discrete dynamical syst…

cond-mat.stat-mech2024

Structural Properties of Hyperuniform Networks

Eli Newby, Wenlong Shi, Yang Jiao +2

Disordered hyperuniform many-particle systems are recently discovered exotic states of matter, characterized by a complete suppression of normalized infinite-wavelength density flu…

q-bio.MN2024

An open problem: Why are motif-avoidant attractors so rare in asynchronous Boolean networks?

Samuel Pastva, Kyu Hyong Park, Ondrej Huvar +2

Asynchronous Boolean networks are a type of discrete dynamical system in which each variable can take one of two states, and a single variable state is updated in each time step ac…

q-bio.MN2006★ 20 cited

Large-scale inference and graph theoretical analysis of gene-regulatory networks in B. stubtilis

C. Christensen, A. Gupta, C. D. Maranas +1

We present the methods and results of a two-stage modeling process that generates candidate gene-regulatory networks of the bacterium B. subtilis from experimentally obtained, yet…