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20062023
most citedApproximation and inference methods for stochastic biochemical kinetics - a tutorial review

341 citations · 1.7k across the 37 of their papers we have counts for

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cond-mat.stat-mech2016★ 1 cited

An exact solution to Brownian dynamics of a reversible bimolecular reaction in one dimension

Stephen Smith, Ramon Grima

Brownian dynamics is a popular fine-grained method for simulating systems of interacting particles, such as chemical reactions. Though the method is simple to simulate, it is gener…

cond-mat.stat-mech2016★ 41 cited

Cox process representation and inference for stochastic reaction-diffusion processes

David Schnoerr, Ramon Grima, Guido Sanguinetti

Complex behaviour in many systems arises from the stochastic interactions of spatially distributed particles or agents. Stochastic reaction-diffusion processes are widely used to m…

cond-mat.stat-mech2015★ 27 cited

Molecular finite-size effects in stochastic models of equilibrium chemical systems

Claudia Cianci, Stephen Smith, Ramon Grima

The reaction-diffusion master equation (RDME) is a standard modelling approach for understanding stochastic and spatial chemical kinetics. An inherent assumption is that molecules…

cond-mat.stat-mech2015★ 59 cited

The linear-noise approximation and the chemical master equation exactly agree up to second-order moments for a class of chemical systems

Ramon Grima

It is well known that the linear-noise approximation (LNA) exactly agrees with the chemical master equation, up to second-order moments, for chemical systems composed of zero and f…

cond-mat.stat-mech2014★ 38 cited

Approximate probability distributions of the master equation

Philipp Thomas, Ramon Grima

Master equations are common descriptions of mesoscopic systems. Analytical solutions to these equations can rarely be obtained. We here derive an analytical approximation of the ti…

cond-mat.stat-mech2014★ 22 cited

System size expansion using Feynman rules and diagrams

Philipp Thomas, Christian Fleck, Ramon Grima +1

Few analytical methods exist for quantitative studies of large fluctuations in stochastic systems. In this article, we develop a simple diagrammatic approach to the Chemical Master…