3 papers
cs.SI2026
Interactively visualizing biological multilayer networks using MiRA
Shir Miryam Nehoray, Yuval Bloch, Shai Pilosof
Multilayer networks are widely used across biology to represent systems in which complex networks vary across space, time, or interaction types. However, interactive visualization…
cs.LG2026
Learning graph topology from metapopulation epidemic encoder-decoder
Xin Li, Jonathan Cohen, Shai Pilosof +1
Metapopulation epidemic models are a valuable tool for studying large-scale outbreaks. With the limited availability of epidemic tracing data, it is challenging to infer the essent…
q-bio.PE2025
Heterogeneity drives plasmid maintenance in large microbial communities
Johannes Nauta, Kaitlin A. Schaal, Ying-Jie Wang +3
Microbiomes are complex systems comprised of many interacting species. Species can survive harsh or changing conditions by rapid adaptation, a process accelerated by the exchange o…