10 papers
Neural Signals Generate Clinical Notes in the Wild
Jathurshan Pradeepkumar, Zheng Chen, Jimeng Sun
Generating clinical reports that summarize abnormal patterns, diagnostic findings, and clinical interpretations from long-term EEG recordings remains labor-intensive. We present CE…
Tokenizing Single-Channel EEG with Time-Frequency Motif Learning
Jathurshan Pradeepkumar, Xihao Piao, Zheng Chen +1
Foundation models are reshaping EEG analysis, yet an important problem of EEG tokenization remains a challenge. This paper presents TFM-Tokenizer, a novel tokenization framework th…
ExPath: Targeted Pathway Inference for Biological Knowledge Bases via Graph Learning and Explanation
Rikuto Kotoge, Ziwei Yang, Zheng Chen +4
Retrieving targeted pathways in biological knowledge bases, particularly when incorporating wet-lab experimental data, remains a challenging task and often requires downstream anal…
ODEBrain: Continuous-Time EEG Graph for Modeling Dynamic Brain Networks
Haohui Jia, Zheng Chen, Lingwei Zhu +6
Modeling neural population dynamics is crucial for foundational neuroscientific research and various clinical applications. Conventional latent variable methods typically model con…
DeepEvidence: Empowering Biomedical Discovery with Deep Knowledge Graph Research
Zifeng Wang, Zheng Chen, Ziwei Yang +5
Biomedical knowledge graphs (KGs) encode vast, heterogeneous information spanning literature, genes, pathways, drugs, diseases, and clinical trials, but leveraging them collectivel…
MLOmics: Cancer Multi-Omics Database for Machine Learning
Ziwei Yang, Rikuto Kotoge, Xihao Piao +6
Framing the investigation of diverse cancers as a machine learning problem has recently shown significant potential in multi-omics analysis and cancer research. Empowering these su…