3 papers
q-bio.GN2026
Genome-Factory: A Library for Tuning, Deploying, and Interpreting Genomic Foundation Models
Weimin Wu, Xuefeng Song, Yibo Wen +5
We introduce Genome-Factory, the first integrated Python library for tuning, deploying, and interpreting genomic foundation models. Our core contribution is to simplify and unify t…
q-bio.GN2025
DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome
Pratik Dutta, Matthew Obusan, Rekha Sathian +8
Whole-genome sequencing (WGS) has revealed numerous non-coding short variants whose functional impacts remain poorly understood. Despite recent advances in deep-learning genomic ap…
cs.LG2025
Fast and Low-Cost Genomic Foundation Models via Outlier Removal
Haozheng Luo, Chenghao Qiu, Maojiang Su +5
To address the challenge of scarce computational resources in genomic modeling, we introduce GERM, a genomic foundation model with strong compression performance and fast adaptabil…