57 citations · 143 across the 5 of their papers we have counts for
5 papers
HuBMAP Data Portal: a resource for multimodal spatial and single-cell data of healthy human tissues
Morgan L. Turner, Thomas C. Smits, Tiffany S. Liaw +46
The NIH Human BioMolecular Atlas Program (HuBMAP) Data Portal (https://portal.hubmapconsortium.org/) serves as a comprehensive repository for multimodal, multi-scale spatial and si…
Insights, opportunities and challenges provided by large cell atlases
Martin Hemberg, Federico Marini, Shila Ghazanfar +27
The field of single-cell biology is growing rapidly and is generating large amounts of data from a variety of species, disease conditions, tissues, and organs. Coordinated efforts…
Hierarchical confusion matrix for classification performance evaluation
Kevin Riehl, Michael Neunteufel, Martin Hemberg
In this work we propose a novel concept of a hierarchical confusion matrix, opening the door for popular confusion matrix based (flat) evaluation measures from binary classificatio…
Stochastic kinetics of viral capsid assembly based on detailed protein structures
Martin Hemberg, Sophia N. Yaliraki, Mauricio Barahona
We present a generic computational framework for the simulation of viral capsid assembly which is quantitative and specific. Starting from PDB files containing atomic coordinates,…
Perfect Sampling of the Master Equation for Gene Regulatory Networks
Martin Hemberg, Mauricio Barahona
We present a Perfect Sampling algorithm that can be applied to the Master Equation of Gene Regulatory Networks (GRNs). The method recasts Gillespie's Stochastic Simulation Algorith…