157 citations · 163 across the 5 of their papers we have counts for
5 papers
Amino-acid network clique analysis of protein mutation correlation effects: a case study of lysozme
Rui Chen, Dengming Ming, He Huang
Optimizing amino-acid mutations has been a most challenging task in modern bio- industrial enzyme designing. It is well known that many successful designs often hinge on extensive…
Energetic frustrations in protein folding at residue resolution: a simulation study of homologous immunoglobulin-like \b{eta}-sandwich proteins
Yunxiang Sun, Dengming Ming
Nonnative residual interactions have attracted increasing attention in recent protein folding researches. Experimental and theoretical investigations had been set out to catch nonn…
Sequence-based prediction of function site and protein-ligand interaction by a functionally annotated domain profile database
Dengming Ming, Min Han, Xiongbo An
Identifying protein functional sites (PFSs) and protein-ligand interactions (PLIs) are critically important in understanding the protein function and the involved biochemical react…
Hidden Structure in Protein Energy Landscapes
Dengming Ming, Marian Anghel, Michael E. Wall
Inherent structure theory is used to discover strong connections between simple characteristics of protein structure and the energy landscape of a Go model. The potential energies…
Allostery in a Coarse-Grained Model of Protein Dynamics
Dengming Ming, Michael Wall
We propose a criterion for optimal parameter selection in coarse-grained models of proteins, and develop a refined elastic network model (ENM) of bovine trypsinogen. The unimodal d…