417 citations · 943 across the 22 of their papers we have counts for
22 papers
First-passage time to capture for diffusion in a 3D harmonic potential
Tianyu Yuan, Ivan Surovtsev, Megan C. King +1
We determine the survival probability and first-passage time (FPT) to capture for a harmonically trapped particle, diffusing outside an absorbing spherical boundary by directly sol…
Identifying topologically associating domains using differential kernels
Luka Maisuradze, Megan C. King, Ivan V. Surovtsev +3
Chromatin is a polymer complex of DNA and proteins that regulates gene expression. The three-dimensional structure and organization of chromatin controls DNA transcription and repl…
The effect of loops on the mean square displacement of Rouse-model chromatin
Tianyu Yuan, Hao Yan, Mary Lou P. Bailey +4
Many researchers have been encouraged to describe the dynamics of chromosomal loci in chromatin using the classical Rouse model of polymer dynamics by the agreement between the mea…
Elasticity of spheres with buckled surfaces
Yingzhen Tian, Megan McCarthy, Megan King +1
The buckling instabilities of core-shell systems, comprising an interior elastic sphere, attached to an exterior shell, have been proposed to underlie myriad biological morphologie…
Uncovering diffusive states of the yeast proton pump, Pma1, and how labeling method can change diffusive behavior
Mary Lou P. Bailey, Susan E. Pratt, Yongdeng Zhang +4
We present and analyze video-microscopy-based single-particle-tracking measurements of the budding yeast (Saccharomyces cerevisiae) membrane protein, Pma1, fluorescently-labeled ei…
Extrusion of chromatin loops by a composite loop extrusion factor
Hao Yan, Ivan Surovtsev, Jessica F Williams +3
Chromatin loop extrusion by Structural Maintenance of Chromosome (SMC) complexes is thought to underlie intermediate-scale chromatin organization inside cells. Motivated by a numbe…