most citedInsights Into the Inner Workings of Transformer Models for Protein Function Prediction

21 citations · 21 across the 4 of their papers we have counts for

collaborators

5 papers

cs.LG2026

Beyond Linear Concepts: Discovering and Aligning Non-Linear Concept Manifolds in Large Language Models

Tido Specht, Elias Benedict Krey, Nils Neukirch +1

Understanding information processing in large language models (LLMs) requires dissecting the geometric organization of their internal token representations. While existing mechanis…

cs.CV2026

Foundation Models vs. Radiomics for Lung Computed Tomography: A Benchmark of Feature Extractors, Classification Heads, and Segmentation Choices

Nils Neukirch, Martin Maurer, Nils Strodthoff

Radiomics is the established approach for CT-based lung cancer phenotyping, yet comparisons with foundation models rarely isolate contributions of feature extractor, classification…

eess.SP2026

Pretraining Strategies and Scaling for ECG Foundation Models: A Systematic Study

M A Al-Masud, Nils Strodthoff

Specialized foundation models are beginning to emerge in various medical subdomains, but pretraining methodologies and parametric scaling with the size of the pretraining dataset a…

cs.LG2026

How Far Does a Shared Linear Map Go? Probing Feature-Space Manipulability for Image Editing

Elias B. Krey, Elias Krey, Nils Neukirch +1

Understanding how image-space transformations manifest in a model's internal representations is a longstanding goal in representation analysis. Prior work has shown that geometric…

cs.LG2023★ 21 cited

Insights Into the Inner Workings of Transformer Models for Protein Function Prediction

Markus Wenzel, Erik Grüner, Nils Strodthoff

Motivation: We explored how explainable artificial intelligence (XAI) can help to shed light into the inner workings of neural networks for protein function prediction, by extendin…