5 papers
MFG: Multi-turn Feedback Guided Molecular Optimization
Trieu Nguyen, Frazier N. Baker, Ruoxi Gao +2
Multi-objective molecular optimization is a critical process in drug discovery that aims to modify a given molecule to simultaneously improve multiple properties while maintaining…
MADDIE: Multi-Agent Drug Discovery Engine
Ye Liu, Reza Averly, Avery Meyer +4
Drug discovery remains a resource-intensive and time-consuming process, involving billions of dollars and a decade of development to advance a drug to market. While many in silico…
RIDE: Reference-Anchored Inference-Time Diffusion Editing for Scaffold Hopping
Ruoxi Gao, Frazier N. Baker, Trieu Nguyen +1
Scaffold hopping is a critical task in drug discovery, which seeks to discover new, structurally distinct molecules that share key functional groups and similar 3D shape with a ref…
Generating Developable 3D Molecules via Pocket-Conditioned Diffusion and Property-Aware Optimization
Ruoxi Gao, Jiangweizhi Peng, Ziqi Chen +10
Drug discovery and development is time-consuming and resource-intensive, motivating computational approaches such as diffusion models for de novo drug design. Many such models foll…
GRU-TV: Time- and velocity-aware GRU for patient representation on multivariate clinical time-series data
Ningtao Liu, Ruoxi Gao, Jing Yuan +3
Electronic health records (EHRs) are usually highly dimensional, heterogeneous, and multimodal. Besides, the random recording of clinical variables results in high missing rates an…