167 citations · 436 across the 13 of their papers we have counts for
13 papers
Role of Resultant Dipole Moment in Mechanical Dissociation of Biological Complexes
Maksim Kouza, Anirban Banerji, Andrzej Kolinski +2
Protein-peptide interactions play essential roles in many cellular processes and their structural characterization is the major focus of current experimental and theoretical resear…
Deciphering general characteristics of residues constituting allosteric communication paths
Girik Malik, Anirban Banerji, Maksim Kouza +2
Considering all the PDB annotated allosteric proteins (from ASD - AlloSteric Database) belonging to four different classes (kinases, nuclear receptors, peptidases and transcription…
Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking
Maciej Blaszczyk, Mateusz Kurcinski, Maksim Kouza +4
Protein-peptide interactions play essential functional roles in living organisms and their structural characterization is a hot subject of current experimental and theoretical rese…
A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain
Maksim Kouza, Chin-Kun Hu, Mai Suan Li +1
We discuss the use of a structure based C-Go model and Langevin dynamics to study in detail the mechanical properties and unfolding pathway of the titin I27 domain. We show that…
Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics
Jacek Wabik, Sebastian Kmiecik, Dominik Gront +2
We describe a combination of all-atom simulations with CABS, a well-established coarse-grained protein modeling tool, into a single multiscale protocol. The simulation method has b…
Numerical Simulation of Folding and Unfolding of Proteins
Maksim Kouza
The thesis examines in detail the folding and unfolding processes of a number of proteins including hbSBD, DDLNF4, single and multi Ubiquitin. Using simplified coarse-grained off-l…