72 citations · 128 across the 3 of their papers we have counts for
9 papers
Efficient path sampling on multiple reaction channels
Titus S. van Erp
Due to the time scale problem, rare events are not accessible by straight forward molecular dynamics. The presence of multiple reaction channels complicates the problem even furthe…
Bubbles and denaturation in DNA
Titus S. van Erp, Santiago Cuesta-Lopez, Michel Peyrard
The local opening of DNA is an intriguing phenomenon from a statistical physics point of view, but is also essential for its biological function. For instance, the transcription an…
Efficiency analysis of reaction rate calculation methods using analytical models I: The 2D sharp barrier
Titus S. van Erp
We analyze the efficiency of different methods for the calculation of reaction rates in the case of two simple analytical benchmark systems. Two classes of methods are considered:…
Breakdown of Lindstedt Expansion for Chaotic Maps
Guido Gentile, Titus S. van Erp
In a previous paper of one of us [Europhys. Lett. 59 (2002), 330--336] the validity of Greene's method for determining the critical constant of the standard map (SM) was questioned…
Elaborating Transition Interface Sampling Methods
Titus S. van Erp, Peter G. Bolhuis
We review two recently developed efficient methods for calculating rate constants of processes dominated by rare events in high-dimensional complex systems. The first is transition…
Investigating Rare Events by Transition Interface Sampling
Daniele Moroni, Titus S. van Erp, Peter G. Bolhuis
We briefly review simulation schemes for the investigation of rare transitions and we resume the recently introduced Transition Interface Sampling, a method in which the computatio…