39 citations · 85 across the 4 of their papers we have counts for
4 papers
Grid diagrams as tools to investigate knot spaces and topoisomerase-mediated simplification of DNA topology
Agnese Barbensi, Daniele Celoria, Heather A. Harrington +2
Grid diagrams with their relatively simple mathematical formalism provide a convenient way to generate and model projections of various knots. It has been an open question whether…
A systematic classification of knotoids on the plane and on the sphere
Dimos Goundaroulis, Julien Dorier, Andrzej Stasiak
In this paper we generate and systematically classify all prime planar knotoids with up to 5 crossings. We also extend the existing list of knotoids in and add all knotoids w…
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids
Julien Dorier, Dimos Goundaroulis, Fabrizio Benedetti +1
The backbone of most proteins forms an open curve. To study their entanglement, a common strategy consists in searching for the presence of knots in their backbones using topologic…
Structural motifs of biomolecules
Jayanth R. Banavar, Trinh X. Hoang, John H. Maddocks +4
Biomolecular structures are assemblies of emergent anisotropic building modules such as uniaxial helices or biaxial strands. We provide an approach to understanding a marginally co…