2 papers
q-bio.QM2026
MultiPASE: Shape-Aware Comparative 3D Genome Analysis
N. Nipu, G. Johnson, C. Roth +4
3D genome structures reconstructed from Hi-C data provide valuable insights into chromatin organization, but comparing them across conditions and time points remains challenging be…
q-bio.QM2026
Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories
Siyuan Zhao, Nafiul Nipu, Hossein Fathollahian +4
We present Loom, a spatial transcriptomics (ST) visual computing system to support the analysis of pseudo-temporal trajectories, comparative investigation across samples and region…