3 papers
q-bio.QM2026
Beyond Tokens: Probing Higher-Order Epistasis in Learned Protein Representations
Maryam Rahimimovassagh, Ivan Garibay, Niloofar Yousefi
Protein fitness landscapes contain nonlinear interactions in which mutation effects depend on other residues. We introduce ORBIT, an Order-Resolved Benchmarking of Interaction Tran…
cs.LG2026
BRIDGE: Bottleneck-Aware Regulator-Set Inference and Diagnosis for Cooperative Gene Regulatory Recovery
Maryam Rahimimovassagh, Clayton Thomas Barham, Ivan Garibay +1
Cooperative gene regulation often depends on groups of regulators acting jointly, but most gene regulatory network (GRN) inference methods output pairwise regulator-target rankings…
cs.LG2026
Adaptive Multi-Expert Graph Transformer for Interpretable EEG-Based Diagnostics
Maryam Rahimimovassagh, Md Elias Hossain, Ivan Garibay +1
Electroencephalographic (EEG) abnormalities arise from dynamic changes in neural synchrony across spatial and temporal scales, yet many computational approaches reduce these dynami…