13 citations · 27 across the 7 of their papers we have counts for
7 papers
A Diffusion-Based Embedding of the Stochastic Simulation Algorithm in Continuous Space
Marcus Thomas, Russell Schwartz
A variety of simulation methodologies have been used for modeling reaction-diffusion dynamics -- including approaches based on Differential Equations (DE), the Stochastic Simulatio…
Automated deconvolution of structured mixtures from bulk tumor genomic data
Theodore Roman, Lu Xie, Russell Schwartz
Motivation: As cancer researchers have come to appreciate the importance of intratumor heterogeneity, much attention has focused on the challenges of accurately profiling heterogen…
Derivative-free optimization of rate parameters of capsid assembly models from bulk in vitro data
Lu Xie, Gregory R. Smith, Russell Schwartz
The assembly of virus capsids from free coat proteins proceeds by a complicated cascade of association and dissociation steps, the great majority of which cannot be directly experi…
Approximate Dynamic Programming using Halfspace Queries and Multiscale Monge decomposition
Gary L. Miller, Richard Peng, Russell Schwartz +1
Let , $P_i \in \field{R}$ for all , be a signal and let be a constant. In this work our goal is to find a function $F:[n]\rightarrow \field{R}$ wh…
CGHTRIMMER: Discretizing noisy Array CGH Data
Charalampos E. Tsourakakis, David Tolliver, Maria A. Tsiarli +2
The development of cancer is largely driven by the gain or loss of subsets of the genome, promoting uncontrolled growth or disabling defenses against it. Identifying genomic region…
Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny
Navodit Misra, Guy Blelloch, R. Ravi +1
Accurate reconstruction of phylogenies remains a key challenge in evolutionary biology. Most biologically plausible formulations of the problem are formally NP-hard, with no known…